Optimization instrumentation: yes % make check % make install Packages w/ extra debug output: AC,B2,CX,D,F,HL,I,O,S,ST,T,Z configure -prefix=/usr/local/hdf5-1.12.0-gcc6 -enable-parallel -enable-hl -with-zlib=/usr/local/zlib-1.2.11-gcc6 Features: You will need to register an account before you can download PrerequisitesĬompiling % tar -zxvf hdf5-1.12.0.tar.gz % cd hdf5-1.12.0 % CC=mpicc. # The mirror site only seems to retain the most recent release, but the 5 Download can be found here at. # The folder where automated builds will take place # Either link to bob for MPICH / ParMetis or see below # Link to the existing bob account for some dependencies The following bash script was used to install the dependencies. See later for the script to install the combinations. The benefit of this is much-increased compatibility, particularly with MPI, while the downside is an inability to specify arbitrary combinations.

This is made straightforward because PETSc allows an HDF5 version to be specified during configuration. Note that in June 2017, we decided to 'bundle' PETSc and HDF5 on Lofty such that there is an installation for each pairwise combination we want to test against. Source /opt/intel/bin/compilervars.sh intel64 bashrc file of the account running the instructions contains the following (at the top):Įxport PATH=$HOME/mpi/bin:$HOME/hdf5/bin:$HOME/bin:$PATH Note that using different dependency versions also requires support in the hostconfig configuration, a snippet of which is included below (the definitive version is at source:trunk/python/hostconfig/machines/dizzy.py, and is not publicly accessible).Ī pre-requisite to the instructions below is that a 'bob' account has been set up as a normal automated build account, and the. This page describes the steps used to set up the machine that runs these tests and hence needs many different versions of the dependencies installed. Installing multiple versions of Chaste's dependencies for testing compatibilityĪs part of Chaste's automated testing, we build and run our main test packs with a range of different library versions, to ensure we do not inadvertently break support - see InstallGuides/DependencyVersions. Some yet-older versions may be tested in continuous and nightly builds. See also MachineNames#DependencyVersions for the defaults on the different build machines.ġ Oldest versions tested in the portability rotation. Installing 'bundled' combinations of PETSc and HDF5Ĭurrent Dependency Configurations in Portability Builds.Installing multiple versions of Chaste's dependencies for testing ….Current Dependency Configurations in Portability Builds.

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